{ "_id": "6a4a626c1e9cffeb4b8337b9", "Type": "Package", "Package": "MigConnectivity", "Title": "Estimate Migratory Connectivity for Migratory Animals", "Version": "0.5.0", "Date": "2025-08-01", "Authors@R": "c(\nperson(\"Jeffrey A.\", \"Hostetler\", , \"jhostetler@usgs.gov\", role = c(\"cre\", \"aut\")),\nperson(\"Michael T.\", \"Hallworth\", role = \"aut\"),\nperson(\"Clark S.\", \"Rushing\", role = \"ctb\"),\nperson(\"Emily B.\", \"Cohen\", role = \"ctb\"),\nperson(\"Valentine\", \"Herrmann\", role = \"ctb\"),\nperson(\"Henry\", \"Stevens\", role = \"ctb\")\n)", "Description": "Allows the user to estimate transition probabilities for\nmigratory animals between any two phases of the annual cycle,\nusing a variety of different data types. Also quantifies the\nstrength of migratory connectivity (MC), a standardized metric\nto quantify the extent to which populations co-occur between\ntwo phases of the annual cycle. Includes functions to estimate\nMC and the more traditional metric of migratory connectivity\nstrength (Mantel correlation) incorporating uncertainty from\nmultiple sources of sampling error. For cross-species\ncomparisons, methods are provided to estimate differences in\nmigratory connectivity strength, incorporating uncertainty. See\nCohen et al. (2018) , Cohen et al.\n(2019) , Roberts et al. (2023)\n, and Hostetler et al. (2025)\n for details on some of these\nmethods.", "License": "GPL (>=3)", "URL": "https://github.com/SMBC-NZP/MigConnectivity", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "LazyData": "true", "LazyDataCompression": "xz", "RoxygenNote": "7.3.2", "SystemRequirements": "JAGS (https://mcmc-jags.sourceforge.net)", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\njags libicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev", "Repository": "https://smbc-nzp.r-universe.dev", "Date/Publication": "2025-08-01 14:28:56 UTC", "RemoteUrl": "https://github.com/smbc-nzp/migconnectivity", "RemoteRef": "HEAD", "RemoteSha": "9b2b1c76f2a41b7b93a64d9a5bcc1df4618ea05d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-05 13:51:53 UTC", "User": "root" }, "Author": "Jeffrey A. Hostetler [cre, aut],\nMichael T. Hallworth [aut],\nClark S. Rushing [ctb],\nEmily B. Cohen [ctb],\nValentine Herrmann [ctb],\nHenry Stevens [ctb]", "Maintainer": "Jeffrey A. Hostetler ", "_user": "smbc-nzp", "_type": "src", "_file": "MigConnectivity_0.5.0.tar.gz", "_fileid": "https://r2.ropensci.org/bad5500885abe6d8b4db8633e4bbf0ed8d9d1290c5ce8dc9e4cb2675916b3565", "_filesize": 3354156, "_sha256": "bad5500885abe6d8b4db8633e4bbf0ed8d9d1290c5ce8dc9e4cb2675916b3565", "_expires": "2026-10-13T13:55:54.000Z", "_created": "2026-07-05T13:51:53.000Z", "_published": "2026-07-05T13:55:56.597Z", "_jobs": [ { "job": 85229055370, "time": 168, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8092439840" }, { "job": 85229055374, "time": 164, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8092439210" }, { "job": 85229055377, "time": 198, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8092439035" }, { "job": 85229055384, "time": 157, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8092435520" }, { "job": 85228796305, "time": 211, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8092417721" }, { "job": 85229055379, "time": 182, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8092441584" }, { "job": 85229055373, "time": 106, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8092431735" }, { "job": 85229055431, "time": 107, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8092431815" }, { "job": 85229055378, "time": 105, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8092431630" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/smbc-nzp/actions/runs/28742920438", "_status": "success", "_upstream": "https://github.com/smbc-nzp/migconnectivity", "_commit": { "id": "9b2b1c76f2a41b7b93a64d9a5bcc1df4618ea05d", "author": "Jeffrey A. 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true, "tojson": true }, { "name": "sampleOriginPos", "title": "Example origin and target site positions and distances on a 2-D plane", "object": "sampleOriginPos", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "sampleOriginRelN", "title": "Example origin site abundances and relative abundances", "object": "sampleOriginRelN", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "samplePsis", "title": "Example transition probabilities (psis) between origin and target sites", "object": "samplePsis", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "sampleTargetDist", "title": "Example origin and target site positions and distances on a 2-D plane", "object": "sampleTargetDist", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "sampleTargetPos", "title": "Example origin and target site positions and distances on a 2-D plane", "object": "sampleTargetPos", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "abundExamples", "title": "Example relative abundance estimates from simulated data", "topics": [ "abundExamples" ] }, { "page": "calcMantel", "title": "Calculate Mantel correlation (rM) from points and/or distances.", "topics": [ "calcMantel" ] }, { "page": "calcMC", "title": "Migratory connectivity strength function", "topics": [ "calcMC", "calcStrength" ] }, { "page": "calcNMC", "title": "Calculate NMC_XY, another type of migratory connectivity strength", "topics": [ "calcNMC" ] }, { "page": "calcTransition", "title": "Calculate psi (transition probabilities between sites in two phases of the annual cycle)", "topics": [ "calcPsi", "calcTransition" ] }, { "page": "diffMantel", "title": "Pairwise differences between two or more independent Mantel correlation estimates", "topics": [ "diffCorr", "diffMantel" ] }, { "page": "diffMC", "title": "Pairwise differences between two or more independent MC estimates", "topics": [ "diffMC", "diffStrength" ] }, { "page": "distFromPos", "title": "Distance matrix from position matrix", "topics": [ "distFromPos" ] }, { "page": "estMantel", "title": "Estimate Mantel correlation (rM) from geolocator, GPS, and/or raster data.", "topics": [ "estCorr", "estMantel" ] }, { "page": "estMC", "title": "Estimate migratory connectivity", "topics": [ "estMC" ] }, { "page": "estNMC", "title": "Estimate NMC_XY, another type of migratory connectivity strength", "topics": [ "estNMC" ] }, { "page": "estStrength", "title": "Estimate MC, migratory connectivity strength", "topics": [ "estStrength" ] }, { "page": "estTransition", "title": "Estimate psi (transition probabilities between locations in two phases of the annual cycle)", "topics": [ "estPsi", "estTransition" ] }, { "page": "getCMRexample", "title": "Grab (from https://github.com/SMBC-NZP/MigConnectivity) example RMark transition probability estimates obtained from simulated data", "topics": [ "getCMRexample" ] }, { 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