Package: MigConnectivity 0.4.7
MigConnectivity: Estimate Migratory Connectivity for Migratory Animals
Allows the user to estimate transition probabilities for migratory animals between any two phases of the annual cycle, using a variety of different data types. Also quantifies the strength of migratory connectivity (MC), a standardized metric to quantify the extent to which populations co-occur between two phases of the annual cycle. Includes functions to estimate MC and the more traditional metric of migratory connectivity strength (Mantel correlation) incorporating uncertainty from multiple sources of sampling error. For cross-species comparisons, methods are provided to estimate differences in migratory connectivity strength, incorporating uncertainty. See Cohen et al. (2018) <doi:10.1111/2041-210X.12916>, Cohen et al. (2019) <doi:10.1111/ecog.03974>, and Roberts et al. (2023) <doi:10.1002/eap.2788> for details on some of these methods.
Authors:
MigConnectivity_0.4.7.tar.gz
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MigConnectivity.pdf |MigConnectivity.html✨
MigConnectivity/json (API)
NEWS
# Install 'MigConnectivity' in R: |
install.packages('MigConnectivity', repos = c('https://smbc-nzp.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/smbc-nzp/migconnectivity/issues
- OVENdata - Ovenbird light-level geolocator and GPS necessary data
- abundExamples - Example relative abundance estimates from simulated data
- projections - Map projections
- sampleOriginDist - Example origin and target site positions and distances on a 2-D plane
- sampleOriginN - Example origin site abundances and relative abundances
- sampleOriginPos - Example origin and target site positions and distances on a 2-D plane
- sampleOriginRelN - Example origin site abundances and relative abundances
- samplePsis - Example transition probabilities (psis) between origin and target sites
- sampleTargetDist - Example origin and target site positions and distances on a 2-D plane
- sampleTargetPos - Example origin and target site positions and distances on a 2-D plane
Last updated 8 months agofrom:f8eddea3a4. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 13 2024 |
R-4.5-win | NOTE | Oct 13 2024 |
R-4.5-linux | NOTE | Oct 13 2024 |
R-4.4-win | OK | Oct 13 2024 |
R-4.4-mac | OK | Oct 13 2024 |
R-4.3-win | OK | Oct 13 2024 |
R-4.3-mac | OK | Oct 13 2024 |
Exports:calcMantelcalcMCcalcPsicalcStrengthcalcTransitiondiffCorrdiffManteldiffMCdiffStrengthdistFromPosestCorrestMantelestMCestPsiestStrengthestTransitiongetCMRexamplegetIsoMapisoAssignmodelCountDataJAGSreversePireversePsiRelAbundreverseTransitionreverseTransitionRelAbundsimCMRDatasimCountDatasimGLDatasimMovesimProbDatasimTelemetryDataweightAssign
Dependencies:abindbitopsbootcaToolsclassclassIntclicodaDBIe1071expmfansigenericsgeodistgluegplotsgtoolsKernSmoothlatticelifecyclemagrittrMASSMatrixmatrixcalcmsmmvtnormncfpillarpkgconfigproxyR2jagsR2WinBUGSRcpprjagsrlangRMarks2sfshapestringistringrsurvivalterratibbleunitsutf8vctrsVGAMwk
'MigConnectivity' package: isotope simulation
Rendered fromsimulateIsoMC.Rmd
usingknitr::rmarkdown
on Oct 13 2024.Last update: 2024-01-11
Started: 2018-07-05
MigConnectivity package
Rendered fromMigConnectivity.Rmd
usingknitr::rmarkdown
on Oct 13 2024.Last update: 2024-01-15
Started: 2016-03-09
MigConnectivity package (older functionality)
Rendered fromolderFunctionality.Rmd
usingknitr::rmarkdown
on Oct 13 2024.Last update: 2024-01-12
Started: 2023-09-04